Uses of Class
org.snpsift.annotate.mem.variantTypeCounter.VariantTypeCounter
Packages that use VariantTypeCounter
Package
Description
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Uses of VariantTypeCounter in org.snpsift.annotate.mem.database
Constructors in org.snpsift.annotate.mem.database with parameters of type VariantTypeCounter -
Uses of VariantTypeCounter in org.snpsift.annotate.mem.dataFrame
Constructors in org.snpsift.annotate.mem.dataFrame with parameters of type VariantTypeCounterModifierConstructorDescriptionDataFrame
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory, boolean hasRefs, boolean hasAlts) DataFrameDel
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory) DataFrameIns
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory) DataFrameMixed
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory) DataFrameMnp
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory) DataFrameOther
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory) DataFrameSnp
(VariantTypeCounter variantTypeCounter, VariantCategory variantCategory) -
Uses of VariantTypeCounter in org.snpsift.annotate.mem.variantTypeCounter
Methods in org.snpsift.annotate.mem.variantTypeCounter that return VariantTypeCounterModifier and TypeMethodDescriptionstatic VariantTypeCounter
VariantTypeCounter.countVariants
(String vcfLines) Count variants in a string of VCF lines (i.e.